Bioinformatics

Exploring Protein Patterns, Cavity Interactions, and Therapeutic Insights in Cancer

Exploring Protein Patterns, Cavity Interaction...

Bioinformatics
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librarian
2 views
HEAL-KGGen: A Hierarchical Multi-Agent LLM Framework with Knowledge Graph Enhancement for Genetic Biomarker-Based Medical Diagnosis

HEAL-KGGen: A Hierarchical Multi-Agent LLM Fra...

Bioinformatics
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librarian
2 views
Benchmarking Docking Tools on Experimental and Artificial Intelligence-Predicted Protein Structures

Benchmarking Docking Tools on Experimental and...

Bioinformatics
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Paloma Tejera-Nevado
2 views
AlphaFold models of host-pathogen interactions elucidate the prevalence and structural modes of molecular mimicry

AlphaFold models of host-pathogen interactions...

Bioinformatics
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librarian
5 views
A conditional generative model to disentangle morphological variation from batch effects in model organism imaging studies

A conditional generative model to disentangle ...

Bioinformatics
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Gerald Quon
5 views
GeneChat: A Multi-Modal Large Language Model for Gene Function Prediction

GeneChat: A Multi-Modal Large Language Model f...

Bioinformatics
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librarian
4 views
Life at the extremes: Maximally divergent microbes with similar genomic signatures linked to extreme environments

Life at the extremes: Maximally divergent micr...

Bioinformatics
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Monireh Safari
7 views
Gene-embedding-based prediction and functional evaluation of perturbation expression responses with PRESAGE

Gene-embedding-based prediction and functional...

Bioinformatics
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librarian
6 views
Coreset-based logistic regression for atlas-scale cell type annotation

Coreset-based logistic regression for atlas-sc...

Bioinformatics
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librarian
6 views
A Self-Supervised Foundation Model for Robust and Generalizable Representation Learning in STED Microscopy

A Self-Supervised Foundation Model for Robust ...

Bioinformatics
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librarian
6 views
TESS: A Forward Simulation Framework for Studying the Role of Transposable Elements in Genome Expansion and Contraction

TESS: A Forward Simulation Framework for Study...

Bioinformatics
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librarian
6 views
Integrative cross-sample alignment and spatially differential gene analysis for spatial transcriptomics

Integrative cross-sample alignment and spatial...

Bioinformatics
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librarian
6 views
CCC-GPU: A graphics processing unit (GPU)-optimized nonlinear correlation coefficient for large transcriptomic analyses

CCC-GPU: A graphics processing unit (GPU)-opti...

Bioinformatics
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librarian
7 views
An improved model for prediction of de novo designed proteins with diverse geometries

An improved model for prediction of de novo de...

Bioinformatics
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Tanja Kortemme
10 views
SCNT: An R Package for Data Analysis and Visualization of Single-Cell and Spatial Transcriptomics

SCNT: An R Package for Data Analysis and Visua...

Bioinformatics
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librarian
10 views
OriGene: A Self-Evolving Virtual Disease Biologist Automating Therapeutic Target Discovery

OriGene: A Self-Evolving Virtual Disease Biolo...

Bioinformatics
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librarian
11 views
Prevalence of dual-donating amines in key regions of functional RNAs

Prevalence of dual-donating amines in key regi...

Bioinformatics
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librarian
14 views
Making AI accessible for forensic DNA profile analysis

Making AI accessible for forensic DNA profile ...

Bioinformatics
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librarian
22 views
Learning Genetic Perturbation Effects with Variational Causal Inference

Learning Genetic Perturbation Effects with Var...

Bioinformatics
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librarian
23 views
Integrating Multimodal Data for a Comprehensive Knowledge Graph to Advance Infectious Disease Research

Integrating Multimodal Data for a Comprehensiv...

Bioinformatics
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librarian
20 views
Structural and temporal dynamics analysis on PANoptosis in sepsis: a bibliometric analysis

Structural and temporal dynamics analysis on P...

Bioinformatics
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Xiangyou Yu
14 views
10 Years of Variational Autoencoder: Insights from Cancer Temporal Progression Studies, a Systematic Literature Review

10 Years of Variational Autoencoder: Insights ...

Bioinformatics
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Davide Cirillo
14 views
Bit-Reproducible Phylogenetic Tree Inference under Varying Core-Counts via Reproducible Parallel Reduction Operators

Bit-Reproducible Phylogenetic Tree Inference u...

Bioinformatics
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librarian
15 views
Gene specificity landscapes for comparative transcriptomic analysis across tissues, cell types, and species

Gene specificity landscapes for comparative tr...

Bioinformatics
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librarian
15 views
RPcontact: Improved prediction of RNA-protein contacts using RNA and protein language models

RPcontact: Improved prediction of RNA-protein ...

Bioinformatics
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Zhichao Miao
14 views
A novel transformer-based platform for the prediction and design of biosynthetic gene clusters for (un)natural products

A novel transformer-based platform for the pre...

Bioinformatics
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librarian
16 views
REnformer, a single-cell ATAC-seq predicting model to investigate open chromatin sites

REnformer, a single-cell ATAC-seq predicting m...

Bioinformatics
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librarian
16 views
Pasta, an age-shift transcriptomic clock, maps the chemical and genetic determinants of aging and rejuvenation

Pasta, an age-shift transcriptomic clock, maps...

Bioinformatics
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librarian
35 views
Cell-ECM Graphs: A Graph-Based Method for Joint Analysis of Cells and the Extracellular Matrix

Cell-ECM Graphs: A Graph-Based Method for Join...

Bioinformatics
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librarian
16 views
Circular van Krevelen diagram for visualizing metabolic pathways

Circular van Krevelen diagram for visualizing ...

Bioinformatics
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librarian
26 views
Deep-Learning on condition specific expression profiles reveal critical cytosines in gene regulation

Deep-Learning on condition specific expression...

Bioinformatics
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librarian
26 views
De novo design of protein-binding aptamers through deep reinforcement learning assembly of nucleic acid fragments

De novo design of protein-binding aptamers thr...

Bioinformatics
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librarian
26 views
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