Bioinformatics

HIDE-Deconv: A hierarchical deconvolution framework for multiscale characterization of cellular remodeling

HIDE-Deconv: A hierarchical deconvolution fram...

Bioinformatics
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dvo
15 views
MeioBIOME: A snakemake workflow for the parallel analysis of meiofaunal genomes and host-associated bacteria/archaea

MeioBIOME: A snakemake workflow for the parall...

Bioinformatics
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librarian
190 views
AINN-Express: A Leakage-Aware, Sequence-Only Predictor of VHH Antibody Expression Built on the AINN-P1 Protein Foundation Model

AINN-Express: A Leakage-Aware, Sequence-Only P...

Bioinformatics
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Lurong Pan
197 views
GatorPrism: Prototype-Conditioned Routing across Coalition Graph Experts for Spatial Multi-Omics Integration

GatorPrism: Prototype-Conditioned Routing acro...

Bioinformatics
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Zhenhao Zhang
158 views
EXCAVATE-HT: A Bioinformatic Pipeline to Identify Targetable Genomic Variants for Allele-Specific Editing

EXCAVATE-HT: A Bioinformatic Pipeline to Ident...

Bioinformatics
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librarian
157 views
A new automated pipeline for whole genome shotgun sequencing analysis and hazard characterization of microbial pesticides

A new automated pipeline for whole genome shot...

Bioinformatics
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librarian
144 views
The Barcode Inference Pipeline (BIP): From Sequencer Output to DNA Barcodes

The Barcode Inference Pipeline (BIP): From Seq...

Bioinformatics
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librarian
143 views
pyfraglib: An integrated cfDNA fragmentomics platform

pyfraglib: An integrated cfDNA fragmentomics p...

Bioinformatics
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librarian
128 views
Phenotype-driven de novo molecular design from gene expression signatures

Phenotype-driven de novo molecular design from...

Bioinformatics
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librarian
105 views
MetaClaw: an auditable AI agent for end-to-end, multi-directional metagenomic and multi-omics analysis

MetaClaw: an auditable AI agent for end-to-end...

Bioinformatics
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Xiaosen Jiang
109 views
CNVeil resolves haplotype-specific copy number and uncovers subclonal architecture hidden from total copy number profiling in single-cell cancergenomes

CNVeil resolves haplotype-specific copy number...

Bioinformatics
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librarian
104 views
Revisiting Logistic Regression for High-Dimensional Gene Expression Data

Revisiting Logistic Regression for High-Dimens...

Bioinformatics
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librarian
102 views
VizR: An Interactive Web Platform for End-to-End RNA-Seq Analysis and Visualization in Plant Biology

VizR: An Interactive Web Platform for End-to-E...

Bioinformatics
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librarian
102 views
Deconvolution-derived cell-type expression targets for personal genome sequence-to-expression prediction

Deconvolution-derived cell-type expression tar...

Bioinformatics
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Li Shen
99 views
FusedFCR: A Fused Forward Continuation-Ratio model for marker selection along cell-fate trajectories

FusedFCR: A Fused Forward Continuation-Ratio m...

Bioinformatics
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librarian
104 views
Graph in Graph (GiG): A novel graph AI framework for integrating and interpreting whole-person healthmedical and omics data

Graph in Graph (GiG): A novel graph AI framewo...

Bioinformatics
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librarian
90 views
Structural bioinformatics of three Epstein-Barr Virus (EBV) Integral Membrane Proteins and their water-soluble QTY analogs

Structural bioinformatics of three Epstein-Bar...

Bioinformatics
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librarian
101 views
neissflow: Streamlining Genomic Epidemiology of Neisseria gonorrhoeae with Nextflow

neissflow: Streamlining Genomic Epidemiology o...

Bioinformatics
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librarian
90 views
High-resolution dissection of concept acquisition in different families of protein language models

High-resolution dissection of concept acquisit...

Bioinformatics
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librarian
90 views
Statistical Inconsistency of Error-correction Objectives for Perfect Phylogenies

Statistical Inconsistency of Error-correction ...

Bioinformatics
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librarian
100 views
X-PAIR: an ultrafast multitask framework for proteome-scale reconstruction of PPI networks and partner-specific interfaces from sequence

X-PAIR: an ultrafast multitask framework for p...

Bioinformatics
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librarian
94 views
CHIMIYA-1: An Autoselection Foundation Model for ADMET Property Prediction, Rigorously Benchmarked Against the Therapeutics Data Commons ADMET Group

CHIMIYA-1: An Autoselection Foundation Model f...

Bioinformatics
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librarian
90 views
BGX: A Comprehensive Pipeline for Genomic Insight into Bioactivity Prediction, Genomic Surveillance, and Novel Biosynthetic Gene Cluster Assessment

BGX: A Comprehensive Pipeline for Genomic Insi...

Bioinformatics
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librarian
99 views
Deformable Models-Based Retinal OCT Layer Segmentation and Classification with Feature Analysis

Deformable Models-Based Retinal OCT Layer Segm...

Bioinformatics
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librarian
94 views
J-AST: a web-based analysis platform for antimicrobial susceptibility testing

J-AST: a web-based analysis platform for antim...

Bioinformatics
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Marc Thilo Figge
93 views
TIR-Learner v4: Accelerated annotation of terminal inverted repeat transposons

TIR-Learner v4: Accelerated annotation of term...

Bioinformatics
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librarian
105 views
A germline shortcut in protein language model retrieval of adaptive immune receptors

A germline shortcut in protein language model ...

Bioinformatics
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Daron Standley
111 views
The Metabarcoding Analysis Pipeline (MAP): Simple, accurate, and flexible metabarcoding

The Metabarcoding Analysis Pipeline (MAP): Sim...

Bioinformatics
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Sean Prosser
117 views
PhytoFam: A Nextflow Pipeline for Genome-Wide Analysis of Plant Gene Families

PhytoFam: A Nextflow Pipeline for Genome-Wide ...

Bioinformatics
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librarian
97 views
A transparent multicriteria and fuzzy classification approach for genome-based probiotic candidate prioritisation

A transparent multicriteria and fuzzy classifi...

Bioinformatics
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Mohamed Amine Gomri
111 views
Integrated Bioinformatics Analysis of PALB2 Reveals Expression Patterns, Molecular Interactions, and Prognostic Significance in Breast Cancer

Integrated Bioinformatics Analysis of PALB2 Re...

Bioinformatics
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Arifa Jahan Bithi
89 views
pHaseMD4AI: Phase-Space Dynamics Dataset with Chemical and pH Perturbations for Physically and Kinetically Consistent Biomolecular AI

pHaseMD4AI: Phase-Space Dynamics Dataset with ...

Bioinformatics
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Yandong Huang
92 views
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