Bioinformatics

Harnessing AI to Build Virtual Cells

Harnessing AI to Build Virtual Cells

Bioinformatics
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Xingyi Cheng
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Multi-Agent Orchestration for Knowledge Extraction and Retrieval: AI Expert System for GPCRs

Multi-Agent Orchestration for Knowledge Extrac...

Bioinformatics
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librarian
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A Hierarchy-aware Gene Exploration Platform for Multi-layered Toxicogenomic Analysis: A Case Study on Acetaminophen-induced Hepatotoxicity

A Hierarchy-aware Gene Exploration Platform fo...

Bioinformatics
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Myeong Gyu Kim
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Predicting Pre-treatment Resistance or Post-treatment Effect? A Systematic Benchmarking of Single-Cell Drug Response Models

Predicting Pre-treatment Resistance or Post-tr...

Bioinformatics
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librarian
1 view
A Machine Learning Approach for Physiological Role Prediction in Protein Contact Networks: a large-scale analysis on the human proteome

A Machine Learning Approach for Physiological ...

Bioinformatics
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librarian
1 view
A correlational study of ABCA3 and SCN4B as exercise-related biomarkers of patients with Stanford type A aortic dissection

A correlational study of ABCA3 and SCN4B as ex...

Bioinformatics
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Naishi Wu
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Full-Length Structural Modeling of Mitofusins with AlphaFold Reveals a Novel Cross-Type Dimerization and Insights into Oligomerization

Full-Length Structural Modeling of Mitofusins ...

Bioinformatics
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librarian
3 views
DyME: An MD-based engine exploiting HTP mutagenesis for protein engineering and recognition mimicry

DyME: An MD-based engine exploiting HTP mutage...

Bioinformatics
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Maria Teresa Pisabarro
5 views
IMAS enables target-aware integration of tumour multiomics to resolve communication-guided regulatory mechanisms

IMAS enables target-aware integration of tumou...

Bioinformatics
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librarian
2 views
TB-Bench: A Systematic Benchmark of Machine Learning and Deep Learning Methods for Second-Line TB Drug Resistance Prediction

TB-Bench: A Systematic Benchmark of Machine Le...

Bioinformatics
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librarian
5 views
Revisiting Reconstruction Likelihood: Variational Autoencoders for Biological and Biomedical Data Clustering

Revisiting Reconstruction Likelihood: Variatio...

Bioinformatics
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Andrej Korenića
6 views
HiReS: A Method for Automated Morphometric Trait Extraction from High-Resolution Plankton Images

HiReS: A Method for Automated Morphometric Tra...

Bioinformatics
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Stylianos Mavrianos
4 views
Pipette: Encoding scientific literature into an executable Skill Graph for multi-agent bioinformatics

Pipette: Encoding scientific literature into a...

Bioinformatics
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librarian
4 views
Cyclome: Large-scale replica-exchange dynamics of 930 cyclic peptide reveal thermal stability and critical metal-binding behavior

Cyclome: Large-scale replica-exchange dynamics...

Bioinformatics
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librarian
8 views
Evaluation of somatic variant calling methods on high coverage tumour-only amplicon sequencing data in a clinical environment

Evaluation of somatic variant calling methods ...

Bioinformatics
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librarian
8 views
Metabolomic Fingerprinting from Dried Blood Spots Enables Individual Identification Across 1,257 Participants at 94% User-Level Accuracy

Metabolomic Fingerprinting from Dried Blood Sp...

Bioinformatics
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Pierrick Hauguel
7 views
TFBindFormer:A Cross-Attention Transformer for Transcription Factor--DNA Binding Prediction

TFBindFormer:A Cross-Attention Transformer for...

Bioinformatics
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librarian
6 views
FM-GPT: Bayesian fine mapping for phenome-wide transcriptome-wide association studies

FM-GPT: Bayesian fine mapping for phenome-wide...

Bioinformatics
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librarian
6 views
A Large Yield Model for Crop Production and Design in Western Canada

A Large Yield Model for Crop Production and De...

Bioinformatics
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librarian
7 views
scMultiPreDICT: A single-cell predictive framework with transcriptomic and epigenetic signatures

scMultiPreDICT: A single-cell predictive frame...

Bioinformatics
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librarian
15 views
DIANA: Deep Learning Identification and Assessment of Ancient DNA

DIANA: Deep Learning Identification and Assess...

Bioinformatics
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librarian
4 views
The Rayleigh Quotient and Contrastive Principal Component Analysis II

The Rayleigh Quotient and Contrastive Principa...

Bioinformatics
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Kayla Jackson
7 views
TopicVI: A Knowledge-guided deep interpretable model for resolving context-specific gene programs

TopicVI: A Knowledge-guided deep interpretable...

Bioinformatics
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librarian
7 views
Statistical Principles Define an Open-Source Differential Analysis Workflow for Mass Spectrometry Imaging Experiments with Complex Designs

Statistical Principles Define an Open-Source D...

Bioinformatics
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Ethan Rogers
6 views
Deep learning enables direct HLA typing from immunopeptidomics data

Deep learning enables direct HLA typing from i...

Bioinformatics
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Juliane Walz
7 views
Structure-aware geometric graph learning for modeling protease-substrate specificity at scale

Structure-aware geometric graph learning for m...

Bioinformatics
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librarian
7 views
MTB-KB: A Curated Knowledgebase of Mycobacterium tuberculosis Related Studies

MTB-KB: A Curated Knowledgebase of Mycobacteri...

Bioinformatics
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Cuidan Li
4 views
Synolog: A Scalable Synteny-Based Framework for Genome Architecture Characterization

Synolog: A Scalable Synteny-Based Framework fo...

Bioinformatics
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librarian
5 views
Benchmarking ambient RNA removal across droplet and well-plate platforms reveals artificial count generation as a critical failure mode of scAR and CellClear

Benchmarking ambient RNA removal across drople...

Bioinformatics
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Lukas Schroeder
4 views
MHCXGraph: A Graph-Based approach to detecting T cell receptor cross-reactivity

MHCXGraph: A Graph-Based approach to detecting...

Bioinformatics
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librarian
7 views
Impact of Regularization Methods and Outlier Removal on Unsupervised Sample Classification

Impact of Regularization Methods and Outlier R...

Bioinformatics
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Carol Heckman
6 views
Structure-Based and Stability-Validated Prioritization of BACE1 Inhibitors Integrating Meta-Ensemble QSAR and Molecular Dynamics

Structure-Based and Stability-Validated Priori...

Bioinformatics
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librarian
11 views
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