Systems Biology

MAPK and mTORC1 signaling converge on Cyclin D to enable cell-cycle re-entry in melanoma persister cells

MAPK and mTORC1 signaling converge on Cyclin D...

Systems Biology
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Sabrina Spencer
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Modeling the Co-Activation of Inflammatory Genes1Mediated by NFκB and IRF-3 During Viral Infections

Modeling the Co-Activation of Inflammatory Gen...

Systems Biology
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librarian
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Improved flux profiling in genome-scale modeling of human cell metabolism

Improved flux profiling in genome-scale modeli...

Systems Biology
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librarian
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PEtab Select: specification standard and supporting software for automated model selection

PEtab Select: specification standard and suppo...

Systems Biology
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Dilan Pathirana
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MINN: A METABOLIC-INFORMED NEURAL NETWORK FOR INTEGRATING OMICS DATA INTO GENOME-SCALE METABOLIC MODELING

MINN: A METABOLIC-INFORMED NEURAL NETWORK FOR ...

Systems Biology
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Gabriele Tazza
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A Transcriptomic Atlas of Healthy Human Skin Links Regional Identity to Inflammatory Disease.

A Transcriptomic Atlas of Healthy Human Skin L...

Systems Biology
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librarian
0 views
Improving plant functional annotation from knowledge graphs using Graph Neural Networks

Improving plant functional annotation from kno...

Systems Biology
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librarian
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A defined growth medium for trace metal limitation studies in Auxenochlorella sp. (UTEX 250-A) during mixotrophic growth with glucose.

A defined growth medium for trace metal limita...

Systems Biology
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librarian
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Gene regulatory network transitions reveal the central transcription factors in lung adenocarcinoma progression

Gene regulatory network transitions reveal the...

Systems Biology
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librarian
1 view
Experimental flooding impacts soil biogeochemistry but not aboveground vegetation in a coastal forest

Experimental flooding impacts soil biogeochemi...

Systems Biology
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librarian
0 views
CMiNet: An R Package and User-Friendly Shiny App for Constructing Consensus Microbiome Networks

CMiNet: An R Package and User-Friendly Shiny A...

Systems Biology
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Rosa Aghdam
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Using Constraint-Based Metabolic Modeling to Elucidate Drug-Induced Metabolic Changes in a Cancer Cell Line

Using Constraint-Based Metabolic Modeling to E...

Systems Biology
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librarian
1 view
Impacts of wind-driven hydrodynamics on the early stages of coral development

Impacts of wind-driven hydrodynamics on the ea...

Systems Biology
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Elizabeth Buccheri
3 views
A Comparative Study of Novel Microscopic Entities in Rock Samples: Implications for Panspermia and the Origin of Life.

A Comparative Study of Novel Microscopic Entit...

Systems Biology
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Juan Manuel González Castaño
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The influence of HIV sense and antisense transcripts on stochastic HIV gene expression and reactivation

The influence of HIV sense and antisense trans...

Systems Biology
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Heng-Chang Chen
2 views
Extensive Benchmarking of Community Detection Algorithms

Extensive Benchmarking of Community Detection ...

Systems Biology
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librarian
2 views
Marine community metabolomes in the eastern tropical North Pacific Oxygen Deficient Zone reveal glycine betaine as a metabolic link between Prochlorococcus and SAR11

Marine community metabolomes in the eastern tr...

Systems Biology
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librarian
2 views
Combining structural modeling and deep learning to calculate the E. coli protein interactome and functional networks

Combining structural modeling and deep learnin...

Systems Biology
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librarian
3 views
From Noise to Models to Numbers: Evaluating Negative Binomial Models and Parameter Estimations in Single-Cell RNA-seq

From Noise to Models to Numbers: Evaluating Ne...

Systems Biology
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Zhixing Cao
1 view
SBMLNetwork: a framework for standards-based visualization of biochemical models

SBMLNetwork: a framework for standards-based v...

Systems Biology
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Herbert Sauro
1 view
Transcription Factor (TF) validation using Dam-IT simultaneously captures genome-wide TF-DNA binding, direct gene regulation, and chromatin accessibility in plant cells

Transcription Factor (TF) validation using Dam...

Systems Biology
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librarian
2 views
Automated MagNet Enrichment Unlocks Deep and Cost-Effective LC-MS Plasma Proteomics

Automated MagNet Enrichment Unlocks Deep and C...

Systems Biology
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Salla Keskitalo
3 views
Performance Characteristics of Zeno Trap Scanning DIA for Sensitive and Quantitative Proteomics at High Throughput

Performance Characteristics of Zeno Trap Scann...

Systems Biology
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librarian
3 views
Adaptation by stochastic tuning of gene expression in mammalian cells

Adaptation by stochastic tuning of gene expres...

Systems Biology
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Saeed Tavazoie
1 view
MxlPy - Python Package for Mechanistic Learning in Life Science

MxlPy - Python Package for Mechanistic Learnin...

Systems Biology
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librarian
7 views
Cross-species blood transcriptional correlates of BCG-mediated protection against tuberculosis include innate and adaptive immune processes

Cross-species blood transcriptional correlates...

Systems Biology
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librarian
4 views
The phosphatases TCPTP, PTPN22, and SHP1 play unique roles in T cell phosphotyrosine maintenance and feedback regulation of the TCR

The phosphatases TCPTP, PTPN22, and SHP1 play ...

Systems Biology
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librarian
5 views
Machine Learning Meets Pharmacokinetics: A Comparative Analysis of Predictive Models for Plasma Concentration-Time Profiles

Machine Learning Meets Pharmacokinetics: A Com...

Systems Biology
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librarian
7 views
An integrative framework linking molecular signatures and locomotory phenotypes in space-induced sarcopenia

An integrative framework linking molecular sig...

Systems Biology
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Brendan Ball
17 views
A multilayer network approach elucidates time- and tissue-specific developmental and aging processes

A multilayer network approach elucidates time-...

Systems Biology
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Jörg Menche
3 views
miRNA-mRNA network analysis identifies PAX5 as a potential regulator of adaptive immune response in COPD

miRNA-mRNA network analysis identifies PAX5 as...

Systems Biology
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librarian
6 views
Unraveling Cross-Cellular Communication in Cannabis sativa Sex Determination: A Network Ontology Transcript Annotation (Nota) Analysis.

Unraveling Cross-Cellular Communication in Can...

Systems Biology
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Leonardo Orozco
15 views
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