Systems Biology

Modeling and dissecting bidirectional feedback in gene-metabolite systems using the CausalFlux method

Modeling and dissecting bidirectional feedback...

Systems Biology
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librarian
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Pushing the limits of SCP: bacSCP, a proof-of-concept study to investigate heterogeneity of bacteria by single cell proteomics.

Pushing the limits of SCP: bacSCP, a proof-of-...

Systems Biology
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librarian
2 views
Antimony 3: Extending human-readable model definitions for SBML Level 3 Core and Packages

Antimony 3: Extending human-readable model def...

Systems Biology
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librarian
4 views
Cell-Type-Resolved Pseudobulk Classification Across Independent Cohorts Identifies Microglial PTPRG as a Transcriptional Hub in Alzheimer's Disease

Cell-Type-Resolved Pseudobulk Classification A...

Systems Biology
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Annikka Polster
6 views
Rhythmic gene expression and behavioral plasticity in harvester and carpenter ants

Rhythmic gene expression and behavioral plasti...

Systems Biology
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Biplabendu Das
5 views
Interplay of the ribosome A and CAR sites

Interplay of the ribosome A and CAR sites

Systems Biology
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librarian
8 views
Improved inference of multiscale sequence statistics in generative protein models

Improved inference of multiscale sequence stat...

Systems Biology
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librarian
11 views
Nonlinear mixed-effect models and tailored parametrization schemes enables integration of single cell and bulk data

Nonlinear mixed-effect models and tailored par...

Systems Biology
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Stefan Kallenberger
9 views
UQ-PhysiCell: An extensible Python framework for uncertainty quantification and model analysis in PhysiCell

UQ-PhysiCell: An extensible Python framework f...

Systems Biology
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librarian
6 views
Kinome profiling allows examination and prediction of kinase inhibitor cardiotoxicity

Kinome profiling allows examination and predic...

Systems Biology
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librarian
9 views
Bistable attractor dynamics in difficult-to-treat rheumatic disease: a multi-axis ODE framework with cross-disease transcriptomic evidence

Bistable attractor dynamics in difficult-to-tr...

Systems Biology
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Sungsoo Jung
11 views
A Unified Control of Cellular Differentiation: From Temporal Multistability to Spatial Pattern Formation in Gene Regulatory Networks

A Unified Control of Cellular Differentiation:...

Systems Biology
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librarian
17 views
Stochastic Gene Expression Model with State-Dependent Protein Activation Delay

Stochastic Gene Expression Model with State-De...

Systems Biology
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librarian
16 views
A phosphorylation switch in PAGE4 drives MED12-mutant fibroid pathogenesis

A phosphorylation switch in PAGE4 drives MED12...

Systems Biology
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Markku Varjosalo
19 views
sRQA: AN INTEGRATIVE PIPELINE FOR SYMBOLIC RECURRENCE QUANTIFICATION ANALYSIS

sRQA: AN INTEGRATIVE PIPELINE FOR SYMBOLIC REC...

Systems Biology
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Paul Curtin
24 views
OmicGlaze: Spatial Multi-Omic Mapping of Traumatic Brain Injury

OmicGlaze: Spatial Multi-Omic Mapping of Traum...

Systems Biology
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Yanxiang Deng
28 views
Equivalent fitness increase achieved by active learning-navigated habitat reconstruction and evolution-induced genome mutation

Equivalent fitness increase achieved by active...

Systems Biology
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librarian
20 views
From the lung to the muscle: Systemic insights from an integrative MultiOmics analysis of harbour porpoises in poor respiratory health

From the lung to the muscle: Systemic insights...

Systems Biology
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Eda M Dönmez
21 views
Systems analysis of ribosomal CAR-site dynamics

Systems analysis of ribosomal CAR-site dynamics

Systems Biology
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Michael Weir
19 views
Competition between mitochondrial and cytosolic ribosomes produces a bistable metabolic switch

Competition between mitochondrial and cytosoli...

Systems Biology
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librarian
23 views
Treatment of murine autoimmune myocarditis with a novel monoclonal antibody that targets multiple inflammatory pathways

Treatment of murine autoimmune myocarditis wit...

Systems Biology
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Stefano Toldo
19 views
Biological Time Equivalence in Vertebrates: Thermodynamic Framework, Comparative Tests, and Clade-Specific Deviations

Biological Time Equivalence in Vertebrates: Th...

Systems Biology
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librarian
20 views
A Cohort-Based Global Sensitivity Benchmark of MRI-Derived Whole-Heart Electromechanical Models in Healthy Hearts

A Cohort-Based Global Sensitivity Benchmark of...

Systems Biology
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Shahrokh Rahmani
23 views
Targeting cancer-associated fibroblasts for treatment of ER+ breast cancer: A mathematical modeling perspective and optimization of treatment strategies

Targeting cancer-associated fibroblasts for tr...

Systems Biology
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librarian
21 views
Linking Infection, Immunity, and Symptoms for Age-Dependent Influenza Severity

Linking Infection, Immunity, and Symptoms for ...

Systems Biology
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librarian
21 views
Actionable spatial prostanoid barriers constrain BiTE-driven adoptive T cell immunity in intact human tumors

Actionable spatial prostanoid barriers constra...

Systems Biology
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librarian
19 views
Bimodal Coupling Optimization in Biological Rhythms: Balancing Energy Efficiency and Functional Demand

Bimodal Coupling Optimization in Biological Rh...

Systems Biology
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Jing Han
30 views
Combinatorial constraints predict that mitochondrial networks contain a large component

Combinatorial constraints predict that mitocho...

Systems Biology
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librarian
29 views
A metabolic model based on a pangenome core unveils new biochemical features of the phytopathogen Xylella fastidiosa

A metabolic model based on a pangenome core un...

Systems Biology
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librarian
23 views
Proteomics for cultivated meat: the importance of Analytical Standardization

Proteomics for cultivated meat: the importance...

Systems Biology
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Franks Kamgang Nzekoue
26 views
Barcoding biology: Chemotype predicts variation in genotype, physiology, and stress response

Barcoding biology: Chemotype predicts variatio...

Systems Biology
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librarian
27 views
Cross-Species Translation Enhances the Use of Mouse Models for Translatability and Drug Discovery in Late-Onset Alzheimer's Disease

Cross-Species Translation Enhances the Use of ...

Systems Biology
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librarian
32 views
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